Hey everyone it's been a while. Been workin my butt off so that's why I'm not as frequent and probably less coherent when I post.
So anyway I'm tasked with "assisting" my boss at a law firm removing virii and spyware without using his method of wipe and reinstall. Seeing this is just a ploy so he can look over my shoulder and try to learn how I do my job I need to streamline things. I am curious how can I make a batch file that will start the command prompt and then type in a command for me?

Example: start cmd, then enter the dos command to start the file c:\cleaner\special.exe

Basically I'm making an auto-extractor in WinRAR and I need it to run a batch file that will execute my programs in dos. Thus avoiding any wandering eyes from seeing what tools I use to assist me in taking care of the issues. I don't care much if he looks over my shoulder as I clean a registry or the windows directory by hand but the utilities are my little handy secret to cut my time down. I just don't need him mindlessly using them and ruining PCs only to have him come to the conclusion that if he can't do it I must not be doing my job right.

Thanks in advance.