I have been maintaining a Store CD for the tech department where I work. Currently, we are in our 4th edition . The one we use now is bootable, has a boot menu with the following options:

Command prompt only
IDE CD support
IDE and SCSI CD support
Parallel Zip drive support
Parallel Zip drive, IDE and SCSI CD support
Windows 98 setup from CD

(details on how to do the bootable CD thing are available at www.bootdisks.com)

The rest of the CD looks something like this:
Patches
Intel Patch Directory:
810, 440's, 430 TX INF update
Pre-OSR2 Busmaster
USB (use first for AGP)
Microsoft win95 patches
Microsoft win98 patches
DUN update
ie updates
media player
outlook express updates
JAVA VM update
outlook express y2k update
VIA Patches and Drivers
4 in 1 driver
PCI Bridge Patch USE FIRST
USB Filter Driver For 98 Only

directx 6.1

Benchmarking
audio winbench
final reality

BIOS Info (including a list of all known bios ID codes)
ID programs

Boot Disks
98
98 SE
950A
950B
950A\With IDE CD support
950B\With IDE CD support
98\With IDE and SCSI CD support
98\With IDE CD support
98 SE\With IDE and SCSI CD support
98 SE\With IDE CD support
DOS\5.0
DOS\6.0
DOS\6.22\basic
DOS\6.22\With IDE CD support

Generic Drivers
CD-ROM Drivers
mouse driver for dos
Zip drive
Zip drive\dos

Miscellaneous Programs
acrobat reader 4.0
alexa
Atomic Clock Program
IE4.01
IE5
Microsoft Speech SDK
Netscape 4.61
NetZero
Plus95
Real player G2
updates.com
EZ-CD creator update

Utilities
BCM Diagnostics win9x
CD-R and CD-RW diag util
CPU speed identifier
EZ-Drive
GHOST
hex editor
Internet Tech Diagnostic
low level format utility
Microsoft registry cleaner
Modem WAN setup guide
MotherBoard Monitor 4.01
Norton Anti Virus Scanner
Partion Magic 4.0
power tweak trial
registry repair tools
Sandra freeware
SoftFSB
tweak bios
visual basic runtimes
winzip
y2k tester

Win98 FE
Win95 OSR 2.1


The idea is that you can use this CD to setup a new system, or repair a broken one. One note: to make the CD bootable, your long file names are restricted to 30 characters, and you will not be able to access dirs that have long names unless you are in windows (dos prompt in windows or windows explorer)
also, no two sub dirs or file names in the same dir can start off with the same 8 characters. Filenames in DOS are truncated, but don't have the 123456~1.123 123456~2.123 format, the file 1234567890.123 would appear in DOS as 12345678.123. this is why they aren't accessable unless windows is running.

Our store CD has about 590 megs of stuff on it. Pretty sweet!!!